Parental gene:

LIN28A, ENSG00000131914

Aliases:LIN28A, CSDD1, LIN-28, LIN28, ZCCHC1, lin-28A
Description:lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986]
Organism:Human (Homo sapiens)
Coordinates:1:26737268..26756213(+)


>ENSG00000131914
ATGGGCTCCGTGTCCAACCAGCAGTTTGCAGGTGGCTGCGCCAAGGCGGCAGAAGAGGCGCCCGAGGAGGCGCCGGAGGA
CGCGGCCCGGGCGGCGGACGAGCCTCAGCTGCTGCACGGTGCGGGCATCTGTAAGTGGTTCAACGTGCGCATGGGGTTCG
GCTTCCTGTCCATGACCGCCCGCGCCGGGGTCGCGCTCGACCCCCCAGTGGATGTCTTTGTGCACCAGAGTAAGCTGCAC
ATGGAAGGGTTCCGGAGCTTGAAGGAGGGTGAGGCAGTGGAGTTCACCTTTAAGAAGTCAGCCAAGGGTCTGGAATCCAT
CCGTGTCACCGGACCTGGTGGAGTATTCTGTATTGGGAGTGAGAGGCGGCCAAAAGGAAAGAGCATGCAGAAGCGCAGAT
CAAAAGGAGACAGGTGCTACAACTGTGGAGGTCTAGATCATCATGCCAAGGAATGCAAGCTGCCACCCCAGCCCAAGAAG
TGCCACTTCTGCCAGAGCATCAGCCATATGGTAGCCTCATGTCCGCTGAAGGCCCAGCAGGGCCCTAGTGCACAGGGAAA
GCCAACCTACTTTCGAGAGGAAGAAGAAGAAATCCACAGCCCTACCCTGCTCCCGGAGGCACAGAATTGA

Library Parental gene expression (RPM)
bodymap2_liver 0 .00 RPM
bodymap2_lung 0 .00 RPM
bodymap2_breast 0 .02 RPM
bodymap2_adipose 0 .00 RPM
bodymap2_adrenal 0 .12 RPM
bodymap2_skeletal_muscle 0 .00 RPM
bodymap2_thyroid 0 .00 RPM
bodymap2_prostate 0 .02 RPM
bodymap2_colon 0 .02 RPM
bodymap2_testis 1 .64 RPM
bodymap2_brain 0 .09 RPM
bodymap2_heart 0 .00 RPM
bodymap2_white_blood_cells 0 .00 RPM
bodymap2_lymph_node 0 .00 RPM
bodymap2_ovary 0 .13 RPM
bodymap2_kidney 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010582 ortholog_one2many 2 retrogenes
Bos taurus ENSBTAG00000040497 ortholog_one2many 3 retrogenes
Canis familiaris ENSCAFG00000012488 ortholog_one2one 2 retrogenes
Callithrix jacchus ENSCJAG00000009796 ortholog_one2many 5 retrogenes
Cavia porcellus ENSCPOG00000019646 ortholog_one2many 1 retrogene
Dasypus novemcinctus ENSDNOG00000010710 ortholog_one2one 5 retrogenes
Equus caballus ENSECAG00000020267 ortholog_one2one 1 retrogene
Gorilla gorilla ENSGGOG00000024918 ortholog_one2one 2 retrogenes
Myotis lucifugus ENSMLUG00000010158 ortholog_one2many 1 retrogene
Nomascus leucogenys ENSNLEG00000009294 ortholog_one2one 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000000299 ortholog_one2many 1 retrogene
Otolemur garnettii ENSOGAG00000003971 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000001684 ortholog_one2one 3 retrogenes
Pan troglodytes ENSPTRG00000000384 ortholog_one2one 2 retrogenes
Pteropus vampyrus ENSPVAG00000017267 ortholog_one2one 1 retrogene
Rattus norvegicus ENSRNOG00000038409 ortholog_one2one 2 retrogenes
Sus scrofa ENSSSCG00000003557 ortholog_one2one 1 retrogene
Ictidomys tridecemlineatus ENSSTOG00000004329 ortholog_one2one 1 retrogene
Tursiops truncatus ENSTTRG00000005678 ortholog_one2one 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2187 90.48 100.00
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2. retro_hsap_2450 78.05 97.61
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Download FASTA sequences of all ENSG00000131914 retrocopies