RetrogeneDB ID: | retro_ttru_481 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_2427:159181..159741(+) | ||
Located in intron of: | ENSTTRG00000008954 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LIN28A | ||
Ensembl ID: | ENSTTRG00000005678 | ||
Aliases: | None | ||
Description: | lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986] |
Percent Identity: | 92.11 % |
Parental protein coverage: | 97.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PEEAQEDAARAAEEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEG |
PEEAQEDAA.AAEEPQLLHG.GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEG | |
Retrocopy | PEEAQEDAAWAAEEPQLLHGVGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEG |
Parental | EAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKK |
EAVEFTFKKSAKGLESIRVTGP.GVFCIGSERRPKGKNMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKK | |
Retrocopy | EAVEFTFKKSAKGLESIRVTGPSGVFCIGSERRPKGKNMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKK |
Parental | CHFCQSINHMVASCPLKAQQAPSSQGKPACFR-EEEEEIHSPAMLPEAQN |
.HFCQSINHMVA.CPLKAQQAP.....P...R.EEE.EIHSPAMLPEAQN | |
Retrocopy | WHFCQSINHMVALCPLKAQQAP-RESQPTFGR<EEE-EIHSPAMLPEAQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010582 | 2 retrocopies | |
Bos taurus | ENSBTAG00000040497 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000009796 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000019646 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010710 | 5 retrocopies | |
Homo sapiens | ENSG00000131914 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000024918 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010158 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009294 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000299 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003971 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001684 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000384 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000038409 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004329 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005678 | 4 retrocopies |