RetrogeneDB ID: | retro_dnov_2300 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_62075:36677..37017(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LIN28A | ||
Ensembl ID: | ENSDNOG00000010710 | ||
Aliases: | None | ||
Description: | lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986] |
Percent Identity: | 71.55 % |
Parental protein coverage: | 56.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTG-PGGVFCIGSERRPKGKNMQKRR |
AL.PP.DVFVHQSK.HM..F.S.KE.E.VEFTFKKSAK..E.....G.P.GVFCIG.ER.P.GK.MQK.R | |
Retrocopy | ALQPPGDVFVHQSKMHMVDFQSQKEDEVVEFTFKKSAK--ERVKGPG>PAGVFCIGNERPPQGKKMQKHR |
Parental | SKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQ |
SK..RCYNCGGLD...KE.KLPPQ.KKCHFC.SISH.VASCPLKA. | |
Retrocopy | SKEHRCYNCGGLDRNTKEYKLPPQSKKCHFCHSISHIVASCPLKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .14 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .15 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 0 .11 RPM |