RetrogeneDB ID: | retro_dnov_690 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_86:256556..257133(-) | ||
Located in intron of: | ENSDNOG00000002238 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LIN28A | ||
Ensembl ID: | ENSDNOG00000010710 | ||
Aliases: | None | ||
Description: | lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986] |
Percent Identity: | 74. % |
Parental protein coverage: | 95.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | SVSNQQFKGGCAKAAEEAPENAAREGEEPQLLHGAGICKWFNVRMGFGFLSMTARAGVAL-DPPVDVFVH |
SVSNQ.F.GGC.KA..EA.EN.A.E.E.PQLLHGAGI.K.FN.RMGF.FL..TA.AGV.L.DPPVD.FVH | |
Retrocopy | SVSNQEFGGGCTKAVAEAQENVAQEAEGPQLLHGAGISKGFNMRMGFSFLPKTA*AGVTL<DPPVDIFVH |
Parental | QSKLHME-GFRSLKEGEAVEFTFKKSAKGLESIRVTGPGG-VFCIGSERRPKGKNMQKRRSKGDRCYNCG |
Q.KLHME.GF.SLKEGEAVEFTF.KSAKGLESIRVTGPGG.VFC.GSER.PKGKNMQK.R.KGDR.YNC. | |
Retrocopy | QGKLHME<GFWSLKEGEAVEFTFNKSAKGLESIRVTGPGG<VFCTGSERQPKGKNMQKCRPKGDRRYNCE |
Parental | GLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQAPSSQG-KPSYFREEEEEIHSPA |
GL.HH.KEC.LPPQP.KCHFCQSI..MVAS........P...G.KPS.F.EEEEEIHS.A | |
Retrocopy | GLHHHVKECRLPPQPTKCHFCQSI--MVAS-STESSTGPQFPG>KPSFFWEEEEEIHSSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .41 RPM | 0 .14 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .15 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 0 .11 RPM |