RetrogeneDB ID: | retro_pabe_1801 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 20:6289595..6290192(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LIN28A | ||
Ensembl ID: | ENSPPYG00000001684 | ||
Aliases: | None | ||
Description: | lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986] |
Percent Identity: | 80. % |
Parental protein coverage: | 97.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPV |
.GSVSNQQ.AGGCAKAAEEAP.E..ED.A.AAD.PQLLH.AGICKWFNVR.GF.FL.MTA.A.VALDPPV | |
Retrocopy | LGSVSNQQLAGGCAKAAEEAPKEVREDTAPAADKPQLLHDAGICKWFNVRLGFIFLCMTALARVALDPPV |
Parental | DVFVHQSKLHMEGFR-SLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQKRRSKGDRC |
DVFV.QSKLH.EGF..SLKE...VE.....S.KG.E.I.V.GPGGVFCIGSERRPKGKNMQKR.SKGD.. | |
Retrocopy | DVFVYQSKLHTEGFL>SLKEDRTVE----ESPKGVETICVIGPGGVFCIGSERRPKGKNMQKRTSKGDGY |
Parental | YNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQGKPTYFREEE-EEIHSPAL |
YNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC.LKAQQ..SAQGKPTY...EE.EEIHSPAL | |
Retrocopy | YNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCLLKAQQASSAQGKPTYSPGEE<EEIHSPAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1415 |