RetrogeneDB ID: | retro_ptro_1415 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 20:11498812..11499410(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LIN28A | ||
Ensembl ID: | ENSPTRG00000000384 | ||
Aliases: | None | ||
Description: | lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986] |
Percent Identity: | 79.9 % |
Parental protein coverage: | 97.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLCMTARAGVALDPPV |
.GSVSNQQ.AGGCAK.AEEAP.E.PED.A..AD.PQLLH.AGICK.FNVR.GF.FL.MTA.A.VALDPPV | |
Retrocopy | LGSVSNQQLAGGCAKVAEEAPKEVPEDTAPPADKPQLLHDAGICKRFNVRLGFVFLSMTALARVALDPPV |
Parental | DVFVHQSKLHMEGFR-SLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQKRRSKGDRC |
DVFV.QSKLH.EGF..SLKE.E.VE.....S.KG.E.I.VTGPGGVFCIGSERRPKGKN.QKR.SKGD.. | |
Retrocopy | DVFVYQSKLHTEGFL>SLKEDETVE----ESPKGVETICVTGPGGVFCIGSERRPKGKNTQKRTSKGDGY |
Parental | YNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQGKPTYFREEEEEIHSPTL |
YNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASC.LKAQQ.PSAQGKPTY...EEEEIHSP.L | |
Retrocopy | YNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCLLKAQQAPSAQGKPTYSPREEEEIHSPAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .04 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 1 .37 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1801 |