RetrogeneDB ID: | retro_cjac_2987 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 7:70612835..70613175(-) | ||
Located in intron of: | ENSCJAG00000001754 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000001784 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEB2 | ||
Ensembl ID: | ENSCJAG00000015347 | ||
Aliases: | None | ||
Description: | transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) [Source:HGNC Symbol;Acc:11619] |
Percent Identity: | 73.28 % |
Parental protein coverage: | 96.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQ-TARPQ |
D.......HKTTIFTDAK.SS..FE.KRI..GI.K.PPDEQ.LYK.DQL.DD.KTLGECGFT.Q..ARPQ | |
Retrocopy | DMVPHVQCHKTTIFTDAKASSITFEVKRIIKGIPKQPPDEQQLYKNDQLSDDSKTLGECGFTCQ<KARPQ |
Parental | APATVGLAFRAEDTFEALCIEPFSSPPELPDVMKP-QDSGSSANEQ |
..A.VGLAF.A.DTFEALCIEPFS.PPELPDVMKP.QDS.SSANE. | |
Retrocopy | PSARVGLAFQADDTFEALCIEPFSGPPELPDVMKP<QDSRSSANEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .11 RPM | 10 .29 RPM |
SRP051959_heart | 0 .07 RPM | 12 .87 RPM |
SRP051959_kidney | 0 .02 RPM | 13 .42 RPM |
SRP051959_liver | 0 .09 RPM | 16 .83 RPM |
SRP051959_lung | 0 .10 RPM | 8 .82 RPM |
SRP051959_lymph_node | 0 .07 RPM | 7 .35 RPM |
SRP051959_skeletal_muscle | 0 .07 RPM | 24 .09 RPM |
SRP051959_spleen | 0 .04 RPM | 7 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019543 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000015347 | 10 retrocopies |
retro_cjac_1593, retro_cjac_1606, retro_cjac_2051, retro_cjac_2613, retro_cjac_2987 , retro_cjac_3030, retro_cjac_342, retro_cjac_3819, retro_cjac_639, retro_cjac_959,
|
Cavia porcellus | ENSCPOG00000021024 | 1 retrocopy | |
Felis catus | ENSFCAG00000004711 | 2 retrocopies | |
Homo sapiens | ENSG00000103363 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015306 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016536 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000015265 | 1 retrocopy | |
Mus musculus | ENSMUSG00000055839 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009471 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010116 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007013 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007663 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004814 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000008061 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015454 | 5 retrocopies |