RetrogeneDB ID: | retro_fcat_40 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:77625220..77625577(+) | ||
Located in intron of: | ENSFCAG00000005915 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026327 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004711 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.18 % |
Parental protein coverage: | 99.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQA |
.VFLMI..HKTTIF.DAKESST.FELKR.VEGILK.PP.EQ.LYKDDQLLDDGKTLGECGFTSQTA.PQA | |
Retrocopy | NVFLMISCHKTTIFMDAKESSTMFELKRTVEGILKQPPGEQQLYKDDQLLDDGKTLGECGFTSQTAGPQA |
Parental | PATVGLAFRADDAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ |
PATVGLAFRAD.AF.ALR.EPFSSPPELPDVMKPQDSGSSAN.Q.VQ | |
Retrocopy | PATVGLAFRADEAFKALRMEPFSSPPELPDVMKPQDSGSSANKQVVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .78 RPM |
SRP017611_liver | 0 .00 RPM | 10 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019543 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000015347 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000021024 | 1 retrocopy | |
Felis catus | ENSFCAG00000004711 | 2 retrocopies |
retro_fcat_112, retro_fcat_40 ,
|
Homo sapiens | ENSG00000103363 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015306 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016536 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000015265 | 1 retrocopy | |
Mus musculus | ENSMUSG00000055839 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009471 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010116 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007013 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007663 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004814 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000008061 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015454 | 5 retrocopies |