RetrogeneDB ID: | retro_nleu_295 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397262.1:63642443..63642844(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEB2 | ||
Ensembl ID: | ENSNLEG00000009471 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.29 % |
Parental protein coverage: | 74.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TGRSAAAPARRGERQPPXXTC-LMIRRHKTT-IFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLL |
TGRSAAAPA.RG.RQPP..TC.....R...T.IFTDAKESSTVFELKR.VEGILKRPPDEQRL.K.DQLL | |
Retrocopy | TGRSAAAPAHRGARQPP*WTC<FLVIRRHRTTIFTDAKESSTVFELKRVVEGILKRPPDEQRLCK-DQLL |
Parental | DDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAV |
DDGKTLGECGFT.QTARPQAPATVGLAFRADD.FEALCI.PFSSPPEL.DVMKPQDSGSSANEQAV | |
Retrocopy | DDGKTLGECGFTRQTARPQAPATVGLAFRADDAFEALCIQPFSSPPELLDVMKPQDSGSSANEQAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019543 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000015347 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000021024 | 1 retrocopy | |
Felis catus | ENSFCAG00000004711 | 2 retrocopies | |
Homo sapiens | ENSG00000103363 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015306 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016536 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000015265 | 1 retrocopy | |
Mus musculus | ENSMUSG00000055839 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009471 | 2 retrocopies |
retro_nleu_295 , retro_nleu_89,
|
Oryctolagus cuniculus | ENSOCUG00000010116 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007013 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007663 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004814 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000008061 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015454 | 5 retrocopies |