RetrogeneDB ID: | retro_pabe_74 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:127201165..127201522(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000004063 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEB2 | ||
Ensembl ID: | ENSPPYG00000007013 | ||
Aliases: | None | ||
Description: | transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) [Source:HGNC Symbol;Acc:11619] |
Percent Identity: | 92.31 % |
Parental protein coverage: | 73.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQ |
MDVFL.IRR.KTTIFTDAKES.TVFELKR.VEGILKRPPDEQRLYKD.QLLDDGKTLGECGFTSQTARPQ | |
Retrocopy | MDVFLVIRRRKTTIFTDAKESTTVFELKRVVEGILKRPPDEQRLYKDYQLLDDGKTLGECGFTSQTARPQ |
Parental | APATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAV |
APATVGLAFRADD.FEALCIEPFSSPP.L.DVMKPQDSGSSA.EQAV | |
Retrocopy | APATVGLAFRADDAFEALCIEPFSSPPDLLDVMKPQDSGSSASEQAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 59 .88 RPM |
SRP007412_cerebellum | 0 .12 RPM | 30 .40 RPM |
SRP007412_heart | 0 .00 RPM | 31 .46 RPM |
SRP007412_kidney | 0 .07 RPM | 69 .64 RPM |
SRP007412_liver | 0 .09 RPM | 48 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_940 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019543 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000015347 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000021024 | 1 retrocopy | |
Felis catus | ENSFCAG00000004711 | 2 retrocopies | |
Homo sapiens | ENSG00000103363 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015306 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016536 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000015265 | 1 retrocopy | |
Mus musculus | ENSMUSG00000055839 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009471 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010116 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007013 | 1 retrocopy |
retro_pabe_74 ,
|
Pan troglodytes | ENSPTRG00000007663 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004814 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000008061 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015454 | 5 retrocopies |