Parental gene: | TCEB2, ENSCJAG00000015347 |
| Aliases: | None |
| Description: | transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) [Source:HGNC Symbol;Acc:11619] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:2815646..2820384(+) |
>ENSCJAG00000015347
NNGGACGTGTTCCTCATGATCCGGCGCCACAAGACCACCATCTTCACGGACGCCAAGGAGTCCAGCACGGTGTTCGAGCT
GAAGCGCATCGTCGAGGGCATCCTCAAGCGGCCGCCCGACGAGCAGCGGCTGTACAAGGATGACCAACTCTTGGATGATG
GCAAGACACTGGGCGAGTGTGGCTTCACCAGTCAAACAGCACGGCCACAGGCCCCAGCCACAGTGGGGCTGGCCTTCCGG
GCAGAGGACACCTTTGAGGCCCTGTGCATCGAGCCATTTTCCAGCCCGCCCGAGCTGCCTGACGTGATGAAGCCCCAGGA
CTCGGGAAGCAGTGCCAATGAACAAGCCGTGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 10 .29 RPM |
| SRP051959_heart | 12 .87 RPM |
| SRP051959_kidney | 13 .42 RPM |
| SRP051959_liver | 16 .83 RPM |
| SRP051959_lung | 8 .82 RPM |
| SRP051959_lymph_node | 7 .35 RPM |
| SRP051959_skeletal_muscle | 24 .09 RPM |
| SRP051959_spleen | 7 .67 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000019543 | ortholog_many2many | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000021024 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000004711 | ortholog_many2many | 2 retrogenes | |
| Homo sapiens | ENSG00000103363 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000015306 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000016536 | ortholog_many2many | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015265 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000055839 | ortholog_one2one | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009471 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010116 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000007013 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007663 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004814 | ortholog_one2many | 6 retrogenes | |
| Sus scrofa | ENSSSCG00000008061 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015454 | possible_ortholog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_342 | 89.47 | 96.61 | Please wait, loading  |
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| 2. | retro_cjac_639 | 81.20 | 99.15 | Please wait, loading |
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| 3. | retro_cjac_959 | 74.36 | 98.31 | Please wait, loading |
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| 4. | retro_cjac_1593 | 82.20 | 99.15 | Please wait, loading |
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| 5. | retro_cjac_1606 | 72.27 | 99.15 | Please wait, loading |
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| 6. | retro_cjac_2051 | 77.78 | 99.15 | Please wait, loading |
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| 7. | retro_cjac_2613 | 67.71 | 79.66 | Please wait, loading |
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| 8. | retro_cjac_2987 | 73.28 | 96.61 | Please wait, loading |
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| 9. | retro_cjac_3030 | 83.19 | 99.15 | Please wait, loading |
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| 10. | retro_cjac_3819 | 91.53 | 99.15 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000015347 retrocopies