RetrogeneDB ID: | retro_cpor_1000 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_39:17683508..17683910(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSCPOG00000012417 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.15 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFA |
S.GP.HF.AP..IFW..V.GMLPHKTKRG..ALD.LKVFDGIPPPYDKKK.MVVP..LKVV.LKP.RKF. | |
Retrocopy | SCGP*HFQAPNCIFWQAVSGMLPHKTKRG*TALDCLKVFDGIPPPYDKKKQMVVPGTLKVVHLKPMRKFS |
Parental | YLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQIMRLRKQAEKNVEKKIGKFTEVLKTHGLL |
YLG.LAHEVGWKYQ.VT.TL.EKRKEKAKIHY..KK.IMRLRKQAEKNVE.KIG.FTEVLKTH.LL | |
Retrocopy | YLGHLAHEVGWKYQVVTTTL-EKRKEKAKIHY-QKKHIMRLRKQAEKNVEEKIGRFTEVLKTHRLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 128 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 217 .85 RPM |
SRP017611_liver | 0 .00 RPM | 158 .83 RPM |
SRP040447_lung | 0 .03 RPM | 502 .00 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 485 .46 RPM |