RetrogeneDB ID: | retro_fcat_324 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:50217400..50217976(+) | ||
Located in intron of: | ENSFCAG00000014190 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSFCAG00000009194 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 67.71 % |
Parental protein coverage: | 96. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | GRGLQIGTFFSCLAVNLSTSRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIF |
GR....G......A.......KV.VV.CE.I.ISGNFYRNKLKYLAFL.K..NTNP..GPYHFRAP..IF | |
Retrocopy | GRHCLLGRLVAIVARQMLLGLKVIVVPCEDISISGNFYRNKLKYLAFLHKPRNTNPPCGPYHFRAPKWIF |
Parental | WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKEKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQ |
..T..GML.HKT..GQAALD.LKV.DGIPPPYDK.K..VV.AALKVV.LKPT.KFAYLG.LAH.VGWKY. | |
Retrocopy | GWTA*GMLLHKTSQGQAALDCLKVLDGIPPPYDKKKQVVVLAALKVVCLKPT*KFAYLGLLAHKVGWKYW |
Parental | AVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEGKINKYTEVLKTHGLL |
AVT.T.EEKRKEKA.IH...KKQL..L.KQA.KN.E.KI...TEVLKTH.LL | |
Retrocopy | AVTTTPEEKRKEKANIHCWMKKQLLKLQKQAGKNLEKKID*STEVLKTHRLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 53 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 214 .88 RPM |
SRP017611_liver | 0 .20 RPM | 93 .20 RPM |