RetrogeneDB ID: | retro_cpor_144 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:83137605..83138422(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC1 | ||
Ensembl ID: | ENSCPOG00000002424 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.38 % |
Parental protein coverage: | 61.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAV |
L..VMKVEKAPQE.YA.IGGLDNQ.QEIKESVELPLTHPEYYEEMGIKP.KGVILY.PPGTGKTLLAKAV | |
Retrocopy | LWSVMKVEKAPQEAYANIGGLDNQMQEIKESVELPLTHPEYYEEMGIKPSKGVILYRPPGTGKTLLAKAV |
Parental | ANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM |
ANQTSATFLRVVGSELIQKYLGDGPKLV.ELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ.TM | |
Retrocopy | ANQTSATFLRVVGSELIQKYLGDGPKLVWELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ*TM |
Parental | LELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE-KTKKRIFQIHTSRMTLADDV |
LELLNQLDGF.S.GD.KVIMATN.IETLDPALIR.GR.DRKIEF.L....K....IFQIHTSRMTLADDV | |
Retrocopy | LELLNQLDGFVSWGDMKVIMATNQIETLDPALIRRGRMDRKIEFRLLHG*KDQEGIFQIHTSRMTLADDV |
Parental | TLDDLIMAKDDLS-GADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL |
TLDDLIM.KD.LS.GADIKAICT.AGLMALRER.MKVTNEDFKKSKENVLYKKQEGTPEGLYL | |
Retrocopy | TLDDLIMVKDNLS>GADIKAICTDAGLMALRERTMKVTNEDFKKSKENVLYKKQEGTPEGLYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 56 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 84 .69 RPM |
SRP017611_liver | 0 .04 RPM | 84 .88 RPM |
SRP040447_lung | 0 .00 RPM | 68 .32 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 77 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017510 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013595 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002424 | 1 retrocopy |
retro_cpor_144 ,
|
Dasypus novemcinctus | ENSDNOG00000006458 | 1 retrocopy | |
Felis catus | ENSFCAG00000011310 | 8 retrocopies | |
Macropus eugenii | ENSMEUG00000001526 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022990 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006231 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000032343 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025948 | 9 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000001655 | 1 retrocopy |