Parental gene: | PSMC1, ENSFCAG00000011310 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547] |
| Organism: | Cat (Felis catus) |
| Coordinates: | B3:134984381..134993790(+) |
>ENSFCAG00000011310
CAGGGTCAAAGTCAGAGTGGTGGTCATGGCCCTGGAGGTGGCAAGAAGGATGACAAGGATAAGAAAAAGAAGTACGAACC
TCCTGTACCAACCAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCGGATGCTGCCAGCAAGCTGCCACTGGTGACAC
CTCACACTCAGTGCCGCTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAGCCTTTAGAAGAAAAGCAAGAGGAGGAGAGATCAAAGGTGGATGATCTGAGGGGGACCCCGAT
GTCGGTAGGAACGTTGGAAGAGATCATTGATGACAATCACGCCATCGTGTCCACGTCTGTGGGCTCAGAACACTACGTCA
GCATTCTCTCCTTTGTAGACAAGGACCTGCTGGAGCCAGGCTGTTCGGTCCTGCTCAACCACAAGGTACATGCCGTCATA
GGGGTGCTCATGGATGACACGGATCCCTTGGTCACAGTGATGAAAGTAGAAAAGGCCCCCCAGGAAACCTATGCTGATAT
TGGGGGGCTGGACAACCAAATCCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACTCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCCCCAAAAGGGGTCATTCTCTATGGACCACCTGGCACAGGTAAAACCTTATTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCCTAAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
TCGGGAGTTATTTCGAGTTGCAGAAGAACACGCGCCATCCATCGTGTTTATTGATGAAATTGATGCCATTGGAACAAAAA
GATACGATTCAAATTCCGGTGGTGAAAGAGAAATCCAGCGAACAATGTTGGAACTGTTGAACCAGTTGGATGGATTTGAT
TCAAGGGGTGACGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAAATTGAGTTCCCCCTGCCCGATGAAAAGACCAAGAGGCGCATCTTTCAGATCCACACAAGCAGGATGACGC
TGGCCGATGATGTGACCCTGGACGACTTGATCATGGCTAAAGATGACCTCTCTGGGGCCGACATCAAGGCGATCTGTACA
GAAGCTGGTCTGATGGCCTTGAGAGAACGCAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCGAAAGAAAACGTTCT
TTATAAAAAACAAGAAGGTACCCCTGAAGGGCTCTACTTGTAG
CAGGGTCAAAGTCAGAGTGGTGGTCATGGCCCTGGAGGTGGCAAGAAGGATGACAAGGATAAGAAAAAGAAGTACGAACC
TCCTGTACCAACCAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCGGATGCTGCCAGCAAGCTGCCACTGGTGACAC
CTCACACTCAGTGCCGCTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAGCCTTTAGAAGAAAAGCAAGAGGAGGAGAGATCAAAGGTGGATGATCTGAGGGGGACCCCGAT
GTCGGTAGGAACGTTGGAAGAGATCATTGATGACAATCACGCCATCGTGTCCACGTCTGTGGGCTCAGAACACTACGTCA
GCATTCTCTCCTTTGTAGACAAGGACCTGCTGGAGCCAGGCTGTTCGGTCCTGCTCAACCACAAGGTACATGCCGTCATA
GGGGTGCTCATGGATGACACGGATCCCTTGGTCACAGTGATGAAAGTAGAAAAGGCCCCCCAGGAAACCTATGCTGATAT
TGGGGGGCTGGACAACCAAATCCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACTCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCCCCAAAAGGGGTCATTCTCTATGGACCACCTGGCACAGGTAAAACCTTATTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCCTAAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
TCGGGAGTTATTTCGAGTTGCAGAAGAACACGCGCCATCCATCGTGTTTATTGATGAAATTGATGCCATTGGAACAAAAA
GATACGATTCAAATTCCGGTGGTGAAAGAGAAATCCAGCGAACAATGTTGGAACTGTTGAACCAGTTGGATGGATTTGAT
TCAAGGGGTGACGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAAATTGAGTTCCCCCTGCCCGATGAAAAGACCAAGAGGCGCATCTTTCAGATCCACACAAGCAGGATGACGC
TGGCCGATGATGTGACCCTGGACGACTTGATCATGGCTAAAGATGACCTCTCTGGGGCCGACATCAAGGCGATCTGTACA
GAAGCTGGTCTGATGGCCTTGAGAGAACGCAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCGAAAGAAAACGTTCT
TTATAAAAAACAAGAAGGTACCCCTGAAGGGCTCTACTTGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 27 .90 RPM |
| SRP017611_kidney | 43 .08 RPM |
| SRP017611_brain | 34 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001839 | ortholog_one2one | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000017510 | ortholog_one2many | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000013595 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000002424 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000006458 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000003601 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000002661 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000001526 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007471 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000022990 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000008150 | ortholog_one2one | 4 retrogenes | |
| Mus musculus | ENSMUSG00000021178 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006231 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000032343 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000025948 | possible_ortholog | 9 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000010020 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000001655 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013582 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_fcat_344 | 70.71 | 53.64 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_fcat_614 | 85.61 | 93.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_fcat_691 | 85.71 | 56.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_fcat_713 | 84.51 | 67.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_fcat_924 | 87.64 | 60.45 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_fcat_1444 | 99.32 | 99.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_fcat_1559 | 82.75 | 56.82 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_fcat_2015 | 79.15 | 63.86 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSFCAG00000011310 retrocopies