RetrogeneDB ID: | retro_fcat_344 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:111690079..111690774(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC1 | ||
Ensembl ID: | ENSFCAG00000011310 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547] |
Percent Identity: | 70.71 % |
Parental protein coverage: | 53.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA |
...PEYYEEMGIKPP..VILYGPP.TGKTLLAKA..NQTSAT.LRVVGSELIQKYL.D.PKL.RE.F.VA | |
Retrocopy | VSSPEYYEEMGIKPPQWVILYGPPVTGKTLLAKA--NQTSATSLRVVGSELIQKYLADEPKLIRE*FQVA |
Parental | EEHAPSIVFIDEIDAIG-TKRYDSNSGGEREIQRTMLELLNQL-DGFDSRGDVKVIMATNRIETLDPALI |
EEH..SIVFIDEIDA.G....Y...SG.EREIQ.T.LELLN...DGFDS..DVKVIMAT..IETLDPAL. | |
Retrocopy | EEHPRSIVFIDEIDATG>XXXYSIYSG-EREIQQTALELLNKM<DGFDSGDDVKVIMATH*IETLDPALT |
Parental | RPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRM |
RPG.IDRKIEF.LP.EKTK..IF.IHTSRMTLADDV.L.DLIMAKDD...ADI..I.TE.GLM.LR.... | |
Retrocopy | RPGLIDRKIEFLLPQEKTKMHIFKIHTSRMTLADDVILEDLIMAKDDILRADINTIYTEYGLMDLRKCGR |
Parental | KVTNEDFKKSKENVLYKKQ-EGTPEGLYL |
KVT....K..K...L.K...EG..EGLYL | |
Retrocopy | KVTKTS-KHLKKLFLTKIK<EGILEGLYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 43 .08 RPM |
SRP017611_liver | 0 .00 RPM | 27 .90 RPM |