RetrogeneDB ID: | retro_fcat_614 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:50712391..50713621(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000023249 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC1 | ||
Ensembl ID: | ENSFCAG00000011310 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547] |
Percent Identity: | 85.61 % |
Parental protein coverage: | 93.41 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 5 |
Parental | PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKV |
PTR.GKKKK.TK.PDAASKLPLVTPHTQC.LKL.KLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKV | |
Retrocopy | PTRAGKKKKETK*PDAASKLPLVTPHTQCWLKLQKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKV |
Parental | DDLRGTPMSVGTLEEIIDDNHA-IVSTS-VGSEHYVSILSFVDKDLLEPGC-SVLLNHKVHAVIGVLMDD |
.DLRGTPMSVG.LE.IIDDNH..I.....VGSEHYVSIL.FVDKDLLEPGC..VLLNHK.HA.IGVLM.D | |
Retrocopy | GDLRGTPMSVGMLEGIIDDNHV>IIMSTSVGSEHYVSILYFVDKDLLEPGC<PVLLNHKMHAIIGVLMGD |
Parental | TDPLVTVMKVEKAPQETYADI-GGLDNQIQEIKE-SVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTL |
TDPLVTVMK.EK.PQE.YADI..GL.NQIQEIK..SVELPLTHPEYYEEMGIKPPKG.IL.GPPGT.KTL | |
Retrocopy | TDPLVTVMKLEKVPQEIYADI<CGLENQIQEIKD<SVELPLTHPEYYEEMGIKPPKGAIL*GPPGTSKTL |
Parental | LAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGERE |
LAKAVANQT..T.LRVVGSELIQKYLGDGPKLV.ELF.VA.EH.PSIVFIDEIDAIGTKR.DSNSGGERE | |
Retrocopy | LAKAVANQTLVTALRVVGSELIQKYLGDGPKLVWELFQVA-EHMPSIVFIDEIDAIGTKR*DSNSGGERE |
Parental | IQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF-PLPDEKTKRRIFQIHTSRMT |
I..TMLEL.NQLDGFDSR.DVKVI.ATN.IETLDPALIRPG.IDR..EF.P.PDEK...RIFQI..SRMT | |
Retrocopy | I**TMLELWNQLDGFDSRSDVKVIIATN*IETLDPALIRPGNIDRTNEF<PWPDEKIMKRIFQIQISRMT |
Parental | LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL |
LADDVTLDDLIMAKDDLSGA.IKAICTEAGLMALRE.RMKV.NEDFKKSKE.VLYKKQEGTPEGLYL | |
Retrocopy | LADDVTLDDLIMAKDDLSGAGIKAICTEAGLMALREHRMKVANEDFKKSKETVLYKKQEGTPEGLYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 43 .08 RPM |
SRP017611_liver | 0 .00 RPM | 27 .90 RPM |