RetrogeneDB ID: | retro_fcat_2015 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:102745513..102746355(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC1 | ||
Ensembl ID: | ENSFCAG00000011310 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547] |
Percent Identity: | 79.15 % |
Parental protein coverage: | 63.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | IGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPG |
I.VLMDDTDPLVT.MKV.K.PQETYAD.GGLDNQIQEIKESVELPL.H.EYYEEM..KP..GVIL...PG | |
Retrocopy | IEVLMDDTDPLVTGMKVGKSPQETYADFGGLDNQIQEIKESVELPLNHLEYYEEMDMKP-QGVILDDLPG |
Parental | TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNS |
T.KTLLAKAVANQTSATFLRVV..ELIQKYLGDG.KL..ELF.VAEEHAPSIVFIDEIDAIGTKR.DSNS | |
Retrocopy | TSKTLLAKAVANQTSATFLRVVDTELIQKYLGDGSKLIQELF*VAEEHAPSIVFIDEIDAIGTKR*DSNS |
Parental | GGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF-PLPDEKTKRRIFQIH |
..EREIQ.TMLE.L.QLDGFD.RGD.KVIMA.N.IETLDPAL.R.G.I.RK.EF.PLP.EKTK...FQI. | |
Retrocopy | SREREIQ*TMLEPLKQLDGFDIRGDMKVIMAAN*IETLDPALVRSGFIGRKMEF>PLPNEKTKKCFFQIQ |
Parental | TSRMTLADDVTLDDLIMAKDDLS-GADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEG |
TSR.TLA.D.TLD.LIMA.DDLS..A..KAI..EA.LMALRE.RMK.TNED.KKSKENVLYK.QEG.PEG | |
Retrocopy | TSRLTLANDITLDKLIMANDDLS>VANVKAIYIEARLMALREHRMKLTNEDLKKSKENVLYKPQEGIPEG |
Parental | LYL |
LYL | |
Retrocopy | LYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 43 .08 RPM |
SRP017611_liver | 0 .00 RPM | 27 .90 RPM |