RetrogeneDB ID: | retro_cpor_694 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_24:3154330..3154538(+) | ||
Located in intron of: | ENSCPOG00000010970 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSCPOG00000000802 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.05 % |
Parental protein coverage: | 58.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LTYRRRLSYNTAS-NKTRLSRTPGNRIV-YLY-TKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT- |
L....RLS.N..S..KTRLS...GN.I....Y.....GK.....CG.CPG.L.GV.AVR.KV.MRLSKT. | |
Retrocopy | LAFDSRLSCNIRS<LKTRLSQNLGNTILCFFY<SRRLGKH-QNLCGMCPG*L*GVCAVRSKVIMRLSKTL |
Parental | KKH |
.KH | |
Retrocopy | RKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .69 RPM | 90 .42 RPM |
SRP017611_kidney | 0 .94 RPM | 142 .90 RPM |
SRP017611_liver | 0 .39 RPM | 86 .97 RPM |
SRP040447_lung | 1 .84 RPM | 189 .84 RPM |
SRP040447_skeletal_muscle | 0 .22 RPM | 148 .17 RPM |