RetrogeneDB ID:

retro_dnov_168

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2285:205372..205762(-)
Located in intron of:ENSDNOG00000024694
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS24
Ensembl ID:ENSDNOG00000010243
Aliases:None
Description:ribosomal protein S24 [Source:HGNC Symbol;Acc:10411]


Retrocopy-Parental alignment summary:






>retro_dnov_168
ATGAATGACACTGTAACTATCCGGACCAGGAAGTTCATGACTAACAGACTACTTCAGCAGAAACAAATGGTCATCGATGT
CCTTCATCCTGGGAAGGCAACAGTACCTAAGACAGAAATTCGGGAAAAACTAGCCAAAATGTACAAGACCACATCTGATG
TCATCTTTGTATTTGGATTCAGAACCCATTTTGGTGGCGGCAAGACAACTGGCTTTGGCATGATTTATGATTCCTTGGAT
TATGCAAAGAAAAATGAACCCAAACACAGACTTGCAAGACATGGCCTGTATGAGAAGAAAAAGACCTCAAGAAAACAGCG
AAAAGAATGCAAGAACAGAATGAAGAAAGTCAGGGGGACTGCAGAGGCCAGTGTTGGTGCTGGCAAAAAG

ORF - retro_dnov_168 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.15 %
Parental protein coverage: 98.48 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTT
MNDTVTIRTRKFMTNRLLQ.KQMVIDVLHPGKATVPKTEIREKLAKMYKTT.DVIFVFGFRTHFGGGKTT
RetrocopyMNDTVTIRTRKFMTNRLLQQKQMVIDVLHPGKATVPKTEIREKLAKMYKTTSDVIFVFGFRTHFGGGKTT
ParentalGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKK
GFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKE.KNRMKKVRGTA.A.VGAGKK
RetrocopyGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKECKNRMKKVRGTAEASVGAGKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 0 .97 RPM 508 .73 RPM
SRP012922_cerebellum 0 .41 RPM 443 .89 RPM
SRP012922_heart 0 .23 RPM 344 .57 RPM
SRP012922_kidney 0 .82 RPM 493 .11 RPM
SRP012922_liver 0 .31 RPM 210 .38 RPM
SRP012922_lung 1 .83 RPM 749 .27 RPM
SRP012922_quadricep_muscle 0 .17 RPM 541 .93 RPM
SRP012922_spleen 0 .80 RPM 970 .06 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_168 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 66 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG00000010243 18 retrocopies
Echinops telfairi ENSETEG0000000748132 retrocopies
Gadus morhua ENSGMOG000000125951 retrocopy
Monodelphis domestica ENSMODG000000250913 retrocopies
Ornithorhynchus anatinus ENSOANG000000063291 retrocopy
Sarcophilus harrisii ENSSHAG000000080903 retrocopies
Sus scrofa ENSSSCG000000103288 retrocopies



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