RetrogeneDB ID: | retro_etel_1806 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_299976:40239..40628(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS24 | ||
Ensembl ID: | ENSETEG00000007481 | ||
Aliases: | None | ||
Description: | ribosomal protein S24 [Source:HGNC Symbol;Acc:10411] |
Percent Identity: | 93.13 % |
Parental protein coverage: | 97.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TVTIRTRK-FMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAK-MYKTTPDVIFVFGFRTHFGGGKTTG |
TVTI.TRK.FMT..LLQ.KQMVIDVLHPGKATVPKTEIREKLAK.MYKTTPDVIFVFGFRTHFGGGKTTG | |
Retrocopy | TVTIWTRK>FMTTKLLQ*KQMVIDVLHPGKATVPKTEIREKLAK>MYKTTPDVIFVFGFRTHFGGGKTTG |
Parental | FGMIYDSLDY-KKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKKE |
FG.IYDSLDY.KKNEPKHRLARHGLYEKKKTSRKQRK.RKNRMKKVRGTAKANVGAGKKKE | |
Retrocopy | FGTIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKGRKNRMKKVRGTAKANVGAGKKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000010243 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000007481 | 32 retrocopies |
retro_etel_1119, retro_etel_1242, retro_etel_1274, retro_etel_1339, retro_etel_1395, retro_etel_1663, retro_etel_1688, retro_etel_1783, retro_etel_1800, retro_etel_1806 , retro_etel_183, retro_etel_1901, retro_etel_1934, retro_etel_1978, retro_etel_1991, retro_etel_2040, retro_etel_2104, retro_etel_223, retro_etel_287, retro_etel_289, retro_etel_369, retro_etel_422, retro_etel_476, retro_etel_503, retro_etel_523, retro_etel_67, retro_etel_744, retro_etel_752, retro_etel_815, retro_etel_904, retro_etel_91, retro_etel_94,
|
Gadus morhua | ENSGMOG00000012595 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025091 | 3 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000006329 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008090 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000010328 | 8 retrocopies |