RetrogeneDB ID: | retro_dnov_1884 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_3496:144358..144762(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSDNOG00000008412 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 63.57 % |
Parental protein coverage: | 82.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLS-PKKVGDDIAKATGDWKGLRITVKLTIQNRQA |
M.PKFDP.EI..VYLRCTGGEV.A.S.L...IG.LGLS.PK..GDDI.K..GDWKGL.I.V..T.QNR.. | |
Retrocopy | MLPKFDPKEIFTVYLRCTGGEVSAMSVLISMIGCLGLS<PKTAGDDITKTVGDWKGLKIMVRVTAQNR*T |
Parental | -QIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEI-VSIARQMRHR-SLARELSGTIKEILGTA |
..IE.V.SAS.L.IKAL..P.RD.KKQK.IK...NITFDE..V.IA..MRH..S..REL..TI..ILGTA | |
Retrocopy | <PIELVLSASTLTIKALTGPSRDKKKQKSIKFRENITFDEM<VNIAQ*MRHH<SEVREL*RTIRKILGTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 1076 .57 RPM |
SRP012922_cerebellum | 0 .00 RPM | 317 .55 RPM |
SRP012922_heart | 0 .00 RPM | 351 .06 RPM |
SRP012922_kidney | 0 .00 RPM | 857 .53 RPM |
SRP012922_liver | 0 .00 RPM | 424 .48 RPM |
SRP012922_lung | 0 .00 RPM | 1040 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 624 .14 RPM |
SRP012922_spleen | 0 .00 RPM | 1918 .94 RPM |