Parental gene:

RPL26L1, ENSOCUG00000006172

Aliases:None
Description:ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:54013932..54023963(+)


>ENSOCUG00000006172
ATGCTGCAATCCCACCCCGGGCCGCAGGGGGCGCCCGTCTGCTTGCTTCCAACGGGAAGGGTGCTTCTCGGTATCTTTCT
GCGCTTGCGCGGCCAGGGAGCCCTACTTCCGGTACTGCGCGCGCAAGTCCTGAACGTGTTCGGTACCAAGGAGACCGTCA
CCATGAAGTTCAATCCCTTCGTGACCTCGGACCGCAGCAAGAACCGCAAACGCCACTTCAACGCGCCGTCGCACGTGCGC
AGGAAGATCATGTCGTCCCCGCTGTCCAAGGAGCTGCGGCAGAAGTACAACGTCCGCTCCATGCCCATCCGCAAGGACGA
CGAGGTCCAGGTGGTCCGAGGACACTACAAAGGTCAGCAGATCGGCAAGGTAGTGCAGGTGTACAGAAAGAAATACGTCA
TCTACATCGAGCGGGTGCAGCGTGAGAAGGCGAACGGCACAACCGTCCACGTGGGCATTCACCCGAGCAAGGTGGTTATC
ACCAGGCTCAAACTGGACAAAGACCGGAAAAAAATTCTTGAACGCAAAGCCAAGTCTCGACAGGTTGGAAAAGAGAAAGG
CAAATACAAGGAAGAACTCATTGAGAAAATGCAGGAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 16 .56 RPM
SRP017611_kidney 24 .73 RPM
SRP017611_liver 7 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000002289 ortholog_one2one 35 retrogenes
retro_dnov_1106, retro_dnov_1147, retro_dnov_1171, retro_dnov_1258, retro_dnov_1304, retro_dnov_1319, retro_dnov_1344, retro_dnov_1381, retro_dnov_1501, retro_dnov_1676, retro_dnov_1819, retro_dnov_1959, retro_dnov_2039, retro_dnov_2041, retro_dnov_2061, retro_dnov_2078, retro_dnov_2103, retro_dnov_2116, retro_dnov_2121, retro_dnov_2287, retro_dnov_2297, retro_dnov_2438, retro_dnov_2545, retro_dnov_2580, retro_dnov_2632, retro_dnov_300, retro_dnov_306, retro_dnov_467, retro_dnov_646, retro_dnov_666, retro_dnov_681, retro_dnov_760, retro_dnov_850, retro_dnov_970, retro_dnov_985,
Felis catus ENSFCAG00000026949 ortholog_one2one 1 retrogene
retro_fcat_524,
Homo sapiens ENSG00000037241 ortholog_one2one 2 retrogenes
retro_hsap_586, retro_hsap_837,
Latimeria chalumnae ENSLACG00000007599 ortholog_one2many 2 retrogenes
retro_lcha_5, retro_lcha_8,
Microcebus murinus ENSMICG00000011312 ortholog_one2one 10 retrogenes
retro_mmur_1020, retro_mmur_1144, retro_mmur_313, retro_mmur_327, retro_mmur_346, retro_mmur_412, retro_mmur_471, retro_mmur_623, retro_mmur_72, retro_mmur_75,
Macaca mulatta ENSMMUG00000003070 ortholog_one2one 1 retrogene
retro_mmul_676,
Oryctolagus cuniculus ENSOCUG00000006538 within_species_paralog 11 retrogenes
retro_ocun_1125, retro_ocun_1290, retro_ocun_1442, retro_ocun_1484, retro_ocun_1515, retro_ocun_1621, retro_ocun_1917, retro_ocun_529, retro_ocun_542, retro_ocun_589, retro_ocun_803,
Procavia capensis ENSPCAG00000002246 ortholog_one2one 10 retrogenes
retro_pcap_137, retro_pcap_157, retro_pcap_188, retro_pcap_204, retro_pcap_337, retro_pcap_404, retro_pcap_419, retro_pcap_42, retro_pcap_422, retro_pcap_448,
Pteropus vampyrus ENSPVAG00000003253 ortholog_one2one 8 retrogenes
retro_pvam_1062, retro_pvam_1208, retro_pvam_122, retro_pvam_353, retro_pvam_688, retro_pvam_71, retro_pvam_769, retro_pvam_877,
Sus scrofa ENSSSCG00000016989 ortholog_one2one 3 retrogenes
retro_sscr_1104, retro_sscr_462, retro_sscr_685,
Ictidomys tridecemlineatus ENSSTOG00000026876 ortholog_one2one 1 retrogene
retro_itri_1141,
Tursiops truncatus ENSTTRG00000010624 ortholog_one2one 8 retrogenes
retro_ttru_1070, retro_ttru_1124, retro_ttru_1694, retro_ttru_1818, retro_ttru_364, retro_ttru_386, retro_ttru_474, retro_ttru_646,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_354 84.18 78.39
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2. retro_ocun_845 64.14 72.86
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3. retro_ocun_1015 66.92 66.33
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4. retro_ocun_1224 69.80 73.37
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Download FASTA sequences of all ENSOCUG00000006172 retrocopies