RetrogeneDB ID: | retro_ocun_354 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:32053003..32053469(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSOCUG00000006172 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 84.18 % |
Parental protein coverage: | 78.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LNVFGTKETVTMKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSP-LSKELRQKYNVRSMPIRKDDEVQVV |
..VFG.KETVTMKFNPF.TSDRSKNRKRHFNAPS.VRRKI..SP..SKE..Q..NV.SMPIRKDD.VQVV | |
Retrocopy | ISVFGSKETVTMKFNPFLTSDRSKNRKRHFNAPSQVRRKILWSP<VSKEMGQQDNVPSMPIRKDDKVQVV |
Parental | RGHYKGQQIGKVVQVYRKKYVIYIERVQREK-ANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ |
R.H.KGQ.IGKVVQVYRKKYVIYI.RVQRE..ANG.T.HVGIHPSKVVITRLKLDKD..KILERKAKSRQ | |
Retrocopy | RRHCKGQEIGKVVQVYRKKYVIYIQRVQRER<ANGATFHVGIHPSKVVITRLKLDKDGEKILERKAKSRQ |
Parental | VGKEKGKYKEELIEKMQE |
VGKEKGKYKEELIEKMQE | |
Retrocopy | VGKEKGKYKEELIEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .39 RPM | 16 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .73 RPM |
SRP017611_liver | 0 .15 RPM | 7 .55 RPM |