RetrogeneDB ID: | retro_sscr_1104 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | GL894759.2:859..1195(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSSSCG00000016989 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 71.68 % |
Parental protein coverage: | 77.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVV |
KFNPFVT...S.NR.R...APS.V..KIMS.PLS..LRQ.Y.V.SMPI.KDDEVQV..GH..GQ.IGKVV | |
Retrocopy | KFNPFVTVHPSTNRERQPSAPSRVCGKIMSPPLSEKLRQDY-VLSMPI*KDDEVQVMQGHDQGQHIGKVV |
Parental | QVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKD |
QV.RK.YV.Y.E..QREKA.GTTVHVGIHPS.VVITRLKLD.D | |
Retrocopy | QVHRKTYVLYME*GQREKAKGTTVHVGIHPSEVVITRLKLDND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 22 .56 RPM |
SRP014902_testis | 0 .00 RPM | 34 .51 RPM |
SRP018288_heart | 0 .00 RPM | 13 .57 RPM |
SRP018288_kidney | 0 .00 RPM | 37 .92 RPM |
SRP018288_liver | 0 .00 RPM | 25 .27 RPM |
SRP018288_lung | 0 .00 RPM | 19 .55 RPM |
SRP018856_adipose | 0 .00 RPM | 37 .28 RPM |
SRP035408_brain | 0 .00 RPM | 53 .36 RPM |
SRP035408_liver | 0 .00 RPM | 23 .37 RPM |