RetrogeneDB ID: | retro_ecab_1019 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:77294339..77294712(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMMP1L | ||
Ensembl ID: | ENSECAG00000020512 | ||
Aliases: | None | ||
Description: | IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317] |
Percent Identity: | 64.29 % |
Parental protein coverage: | 75.3 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MLRGILGK-TFRLVGYTIQYACIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVCAENLSRHFYGIQRGDIV |
.L...LGK..F.L.GYT..Y.C..H.AFEY.GG.VMCSG...EP.IQN..IV.AENLS.HFY.IQRGD.V | |
Retrocopy | VLHDVLGK>SF*LIGYTVEYGCLDHSAFEYTGGIVMCSG-LIEPSIQN*YIVFAENLSQHFYSIQRGDSV |
Parental | IAKSPSDPKSNICKRVIGLEGDKILTSRPSDFFKSHNYVPTGHVWLEGDNLQNSTD |
IAKS.SDPKSNICKR.IGLEGDKIL...PS.FFKSH.YVP.GH..L.G........ | |
Retrocopy | IAKSLSDPKSNICKRAIGLEGDKILNNGPSPFFKSHSYVPMGHA*LKGAQIPGTME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 3 .36 RPM |
SRP021940_cerebellum | 0 .00 RPM | 9 .56 RPM |
SRP021940_embryo | 0 .00 RPM | 5 .88 RPM |
SRP021940_placental_villous | 0 .00 RPM | 6 .64 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 3 .18 RPM |
SRP021940_testis | 0 .00 RPM | 7 .93 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_548 |