RetrogeneDB ID: | retro_ggor_651 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:60441361..60441860(+) | ||
Located in intron of: | ENSGGOG00000009860 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMMP1L | ||
Ensembl ID: | ENSGGOG00000014897 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MLRGVLGK-TFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVFAENLSRHFYGIQRGDIV |
MLRGVLGK.TF.LVGY.IQYGCIAHCAFEY.GGVVMCSGPSMEPTIQNSDIVFAENLSRHFY.IQRGDIV | |
Retrocopy | MLRGVLGK<TF*LVGYAIQYGCIAHCAFEYFGGVVMCSGPSMEPTIQNSDIVFAENLSRHFYSIQRGDIV |
Parental | IAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGD-NLQNSTDSRCYGPIPYGLIR |
IAKSPSDP.SNICKRV.GLEGDKILTTSPSDFFKS.SYVP.GHVWLEGD.NLQNSTDS..YGPIPY.LIR | |
Retrocopy | IAKSPSDPTSNICKRVTGLEGDKILTTSPSDFFKSYSYVPVGHVWLEGD>NLQNSTDSSYYGPIPYELIR |
Parental | GRIF-FKIWPLSDFGFLRASPNGHRFSDD |
GRIF.FKI.PLSDFGFLRAS.NGHRFSDD | |
Retrocopy | GRIF>FKIRPLSDFGFLRASLNGHRFSDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 3 .93 RPM |
SRP007412_cerebellum | 0 .08 RPM | 6 .42 RPM |
SRP007412_heart | 0 .03 RPM | 1 .56 RPM |
SRP007412_kidney | 0 .08 RPM | 9 .16 RPM |
SRP007412_liver | 0 .05 RPM | 6 .38 RPM |
SRP007412_testis | 0 .10 RPM | 6 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_547 |