RetrogeneDB ID: | retro_rnor_2450 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:35001694..35002102(+) | ||
Located in intron of: | ENSRNOG00000006514 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Immp1l | ||
Ensembl ID: | ENSRNOG00000004829 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.12 % |
Parental protein coverage: | 83.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | AFEYVGGVVMCSGPSMEPTIQNSDIVFAENLSRHFYGIQRGDIVIAKSP-SDPKSSICKRVIGLE-GDKI |
AFE..GG..MCSG..M.PTIQN....FAENLS.HFYGIQRGD.V..KS..SDPK..IC.RV.GLE.GDK. | |
Retrocopy | AFEHIGGAEMCSGQ*MKPTIQNMNNAFAENLS*HFYGIQRGDTVFKKSS<SDPKLNICTRVTGLE<GDKS |
Parental | LADNPPDIFKSRNYVPTGHVWLEGDNLENSTDSRCYGPVPYGLIRGRIFFKIWPFSDFGFLRDS-PNGHR |
L...P.D.FKS..Y.PTGH.WLEGD...N.TD.RC.GP...GLI.G..FFK.WPF..FGFL....P.GHR | |
Retrocopy | LTTSPLDCFKSHSYMPTGH-WLEGDTSQNPTDCRCCGPITAGLIKG*LFFKVWPFHSFGFLHNC<PSGHR |
Parental | F |
F | |
Retrocopy | F |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .61 RPM |
SRP017611_liver | 0 .00 RPM | 4 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_591 |