RetrogeneDB ID: | retro_mmus_591 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:94028080..94028358(+) | ||
Located in intron of: | ENSMUSG00000036099 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Immp1l | ||
Ensembl ID: | ENSMUSG00000042670 | ||
Aliases: | Immp1l, 1500034J20Rik, 2610528O17Rik, AU042386 | ||
Description: | IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913791] |
Percent Identity: | 53.68 % |
Parental protein coverage: | 55.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KSPSDPKSNICKRVIGLE-GDKILSTSPSDVFKSRSYVPTGHVWLEGDNLQNSTDSRYYGPIPYGLIRGR |
K.P.DPK.NICKRV..LE.GDK.L.T...DVFKS.SY..TGH.WLE....QN..D.R..GPI..GLI.G. | |
Retrocopy | KKPNDPKLNICKRVTCLE<GDKSLTTILLDVFKSHSYMLTGH-WLEDNTVQNPKDCRCCGPITSGLIKG* |
Parental | IFFKI--WPFSDFGFLRDSPNGQRF |
IFFK.....F..F......P.G..F | |
Retrocopy | IFFKV*GLAFLLF*IFAQQPDGHSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .60 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .60 RPM |
SRP007412_heart | 0 .00 RPM | 12 .45 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .95 RPM |
SRP007412_liver | 0 .00 RPM | 5 .19 RPM |
SRP007412_testis | 0 .00 RPM | 12 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_2450 |