RetrogeneDB ID: | retro_sscr_1178 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | X:131523300..131523740(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000030913 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMMP1L | ||
Ensembl ID: | ENSSSCG00000013322 | ||
Aliases: | None | ||
Description: | IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317] |
Percent Identity: | 83.89 % |
Parental protein coverage: | 89.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MLRGVLGKTFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQNPDIVFAENLSRHFYSIQRGDIVI |
MLRG.LGKTF.LVGYTIQ.GCIAHCAFE.VGGV.M.SGPSMEPTIQN.DIVFAEN.S.HF.SIQRGDIVI | |
Retrocopy | MLRGILGKTFQLVGYTIQCGCIAHCAFECVGGV-MRSGPSMEPTIQNSDIVFAENPS*HFCSIQRGDIVI |
Parental | AK-SPSDPKSNICKRVIGLEGDKILTNSPSGFFKGHSYVPTGHVWLEGDNLQNSTDSRYYGPVPYGLIRG |
AK.S.SDPKSNI.KRV.GLE.DKILTNS.S.FFKGHSYVPTGH..LEGDNLQNST.SRYYG.VPYGLI.. | |
Retrocopy | AK<SLSDPKSNIYKRVVGLEEDKILTNSQSDFFKGHSYVPTGHI*LEGDNLQNSTHSRYYGLVPYGLIGR |
Parental | RIFFKIWPL |
.IFFKIWPL | |
Retrocopy | YIFFKIWPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 1 .73 RPM |
SRP014902_testis | 0 .00 RPM | 4 .53 RPM |
SRP018288_heart | 0 .00 RPM | 15 .35 RPM |
SRP018288_kidney | 0 .00 RPM | 11 .03 RPM |
SRP018288_liver | 0 .00 RPM | 7 .04 RPM |
SRP018288_lung | 0 .00 RPM | 1 .73 RPM |
SRP018856_adipose | 0 .00 RPM | 3 .39 RPM |
SRP035408_brain | 0 .00 RPM | 1 .46 RPM |
SRP035408_liver | 0 .00 RPM | 3 .32 RPM |