RetrogeneDB ID: | retro_eeur_156 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_106386:392..717(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000003783 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.48 % |
Parental protein coverage: | 57.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM-LGETNPADSKPGTIRGDFCIQ |
ASE.LLK.HYIDLKD..FF.GLVKYM.SGPVVAMVW.GLNVVKTGRV..LG...PADSK.GTI..DFCIQ | |
Retrocopy | ASEDLLKEHYIDLKDSSFFTGLVKYMHSGPVVAMVWQGLNVVKTGRVV>LGK--PADSKLGTI*RDFCIQ |
Parental | VGRNIIHGSDSVKSAEKEISLWFKPEELLNYKSCAFDWIYE |
VGRNII......KSAEKEISL.FKPEEL...KSCAFDWIYE | |
Retrocopy | VGRNIIRAVTQ*KSAEKEISLRFKPEELVSHKSCAFDWIYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 6 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .63 RPM |
SRP017611_liver | 0 .00 RPM | 8 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008022 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000018395 | 5 retrocopies | |
Equus caballus | ENSECAG00000021658 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003783 | 2 retrocopies |
retro_eeur_156 , retro_eeur_5,
|
Felis catus | ENSFCAG00000006742 | 5 retrocopies | |
Homo sapiens | ENSG00000011052 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007784 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016929 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000001940 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012580 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015573 | 4 retrocopies | |
Mus musculus | ENSMUSG00000020857 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024946 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025331 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000002671 | 8 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014470 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000013053 | 6 retrocopies | |
Tursiops truncatus | ENSTTRG00000007433 | 1 retrocopy |