Parental gene:

ENSEEUG00000003783

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_159:903..14452(+)


>ENSEEUG00000003783
GTCTGGGAAGGGCTGAATGTTGTAAAGACAGGCCGAGTTATGCTTGGGGAGACCAACCCAGCAGACTCTAAGCCAGGGAC
CATCCGCGGCGACTTTTGTATCCAAGTTGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGCCTCTGAGGAACTCCTGAAACAGCATTACATTGACCTGAAAGACCGTCCATTCTTCCCTGGGCTTGTTAAGTACAT
GAACTCTGGGCCAGTGGTGGCTATGGTCTGGGAGGGGCTGAATGTAGTGAAGACAGGGAGAGTGATGCTTGGGGAAACCA
ATCCAGCCGATTCTAAGCCAGGCACCATTCGAGGGGACTTCTGCATTCAGGTTGGCAGGAACATCATTCATGGCAGTGAT
TCAGTAAAAAGTGCTGAGAAAGAAATCAGCCTATGGTTTAAGCCTGAAGAATTGCTTAACTACAAGTCCTGTGCTTTTGA
TTGGATTTATGAATAA

Library Parental gene expression (RPM)
SRP017611_liver 8 .04 RPM
SRP017611_kidney 17 .63 RPM
SRP017611_brain 6 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008022 ortholog_one2many 3 retrogenes
retro_amel_1573, retro_amel_390, retro_amel_538,
Callithrix jacchus ENSCJAG00000018395 possible_ortholog 5 retrogenes
retro_cjac_1765, retro_cjac_2517, retro_cjac_2642, retro_cjac_3940, retro_cjac_471,
Equus caballus ENSECAG00000021658 ortholog_one2many 1 retrogene
retro_ecab_404,
Felis catus ENSFCAG00000006742 ortholog_one2many 5 retrogenes
retro_fcat_1083, retro_fcat_1117, retro_fcat_1475, retro_fcat_216, retro_fcat_663,
Homo sapiens ENSG00000011052 possible_ortholog 1 retrogene
retro_hsap_1063,
Loxodonta africana ENSLAFG00000007784 ortholog_one2many 1 retrogene
retro_lafr_636,
Myotis lucifugus ENSMLUG00000016929 ortholog_one2many 3 retrogenes
retro_mluc_1422, retro_mluc_1882, retro_mluc_637,
Macaca mulatta ENSMMUG00000001940 possible_ortholog 1 retrogene
retro_mmul_1827,
Monodelphis domestica ENSMODG00000012580 possible_ortholog 1 retrogene
retro_mdom_1811,
Mustela putorius furo ENSMPUG00000015573 ortholog_one2many 4 retrogenes
retro_mputfur_1236, retro_mputfur_1590, retro_mputfur_327, retro_mputfur_912,
Mus musculus ENSMUSG00000020857 possible_ortholog 1 retrogene
retro_mmus_221,
Oryctolagus cuniculus ENSOCUG00000024946 possible_ortholog 1 retrogene
retro_ocun_418,
Otolemur garnettii ENSOGAG00000025331 possible_ortholog 9 retrogenes
retro_ogar_1326, retro_ogar_1875, retro_ogar_1997, retro_ogar_2373, retro_ogar_2393, retro_ogar_2779, retro_ogar_3299, retro_ogar_483, retro_ogar_95,
Rattus norvegicus ENSRNOG00000002671 possible_ortholog 8 retrogenes
retro_rnor_1129, retro_rnor_1610, retro_rnor_1708, retro_rnor_1784, retro_rnor_1966, retro_rnor_2646, retro_rnor_2951, retro_rnor_628,
Sarcophilus harrisii ENSSHAG00000014470 possible_ortholog 3 retrogenes
retro_shar_130, retro_shar_554, retro_shar_781,
Tupaia belangeri ENSTBEG00000013053 possible_ortholog 6 retrogenes
retro_tbel_1271, retro_tbel_1386, retro_tbel_2497, retro_tbel_294, retro_tbel_4620, retro_tbel_820,
Tursiops truncatus ENSTTRG00000007433 ortholog_one2many 1 retrogene
retro_ttru_1821,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_5 89.09 57.59
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2. retro_eeur_156 77.48 57.59
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Download FASTA sequences of all ENSEEUG00000003783 retrocopies