RetrogeneDB ID: | retro_eeur_26 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_1310:118055..118295(-) | ||
Located in intron of: | ENSEEUG00000015646 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000009000 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SVPSLAAGLLFGGLAGLGAYQLSQDPRNIWLCLAVASGTLAGIMGMRFYNSGKFMPAGLIAGASLLMVAK |
SV.SLAAGLLFGGLAGLGAYQLS.DPR.I.LCL.V.SGTLAGIMGMRFYNSGK.MP.GLIAGASLLMVAK | |
Retrocopy | SVLSLAAGLLFGGLAGLGAYQLS*DPRSI*LCLVV-SGTLAGIMGMRFYNSGKYMPPGLIAGASLLMVAK |
Parental | LGISVLNGPRQ |
LGISVLNGP.Q | |
Retrocopy | LGISVLNGPHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 11 .28 RPM |
SRP017611_kidney | 3 .38 RPM | 40 .88 RPM |
SRP017611_liver | 1 .61 RPM | 22 .83 RPM |