RetrogeneDB ID: | retro_fcat_301 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:220271048..220271268(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000014178 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.54 % |
Parental protein coverage: | 65.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AAGLL-FGSLAGLGAYQLSQDPRNIWVFLATSGTLAGIMGMRFYHSGKFLPA-GLIAGASLLMVA-KLGI |
AAGLL....LAGLGAYQLSQ.P.N....L..SGT..GIMGMRF.HSGK..P..G.I..ASLL.V..K.GI | |
Retrocopy | AAGLL<LRGLAGLGAYQLSQKPGNV*FSLPRSGT--GIMGMRFHHSGKCMPG<GSIVAASLLLVVIKFGI |
Parental | SVLNRPHQ |
SV..RP.. | |
Retrocopy | SVFKRPYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .60 RPM |
SRP017611_liver | 0 .00 RPM | 28 .41 RPM |