RetrogeneDB ID: | retro_fcat_983 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:102163687..102164028(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000014178 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQKDSGPLVPLHWIGFGYAALVASGGIIGY-AKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNIWVFLAT |
.QK.SGPL.P.HW.GF.Y..LV.SGGII...AKAG...SL.AG.LFGSLAGLGA.QL..DPR.IWVFLAT | |
Retrocopy | VQKVSGPLEPIHWTGFYYKVLVTSGGIIAR<AKAGRIWSLVAGVLFGSLAGLGAHQLPEDPRSIWVFLAT |
Parental | SGTLAGIMGMRFYHSGKFLPAGLIAGASLLMVAKLGISVLNRPHQ |
SGTLAGI.GM.FYHSGKF.P.GL....SLL.V.KLGIS.LNRPHQ | |
Retrocopy | SGTLAGILGMSFYHSGKFMPTGLVTCTSLLTVIKLGISMLNRPHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .60 RPM |
SRP017611_liver | 0 .00 RPM | 28 .41 RPM |