RetrogeneDB ID: | retro_ocun_284 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:47534345..47534668(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000016368 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.82 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DTGPLVPLHYFGFGYAALVATGGIIGYAKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTL |
.T.PL..LHY.GF.....V....II.YAK.G.VP.LA.G.LF..LAGLGAYQ.S...RN..VFL.TSGTL | |
Retrocopy | NTSPLATLHYLGF---VCVCSSEIITYAKSGTVPPLAVGFLFRALAGLGAYQPSHNLRNNSVFLTTSGTL |
Parental | AGIMGMRFYHSGKFMPAGLIAGAS-LLMVAKVGISMLDRPHQ |
.GIM.M..YH.G.FMPAGLI...S.L.MV.K.G.S.L.RPHQ | |
Retrocopy | TGIMEMKVYHYGIFMPAGLITDIS<LMMVIKLGFSILNRPHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 107 .94 RPM |
SRP017611_liver | 0 .08 RPM | 18 .88 RPM |