RetrogeneDB ID: | retro_fcat_367 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:17814197..17814509(-) | ||
Located in intron of: | ENSFCAG00000009845 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000014178 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.19 % |
Parental protein coverage: | 92.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VPLHWIGFGYAALVASGGIIGYAKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNIWVFLATSGTLAGIMG |
VPLHWIGFG.AALVASG.IIG.AKAGSVPSLAAGLLF.S.AGLGAY.LSQDP.NIWVFLATSGTLA.IMG | |
Retrocopy | VPLHWIGFGNAALVASGRIIGCAKAGSVPSLAAGLLFSSFAGLGAYHLSQDPGNIWVFLATSGTLADIMG |
Parental | MRFYHSGKFLPAGLIAGASLLMVAKLGISVLNRPHQ |
.RF.HSG..L.A.L.....LLMVAKLGISVLNRP.. | |
Retrocopy | IRFCHSGRRLWA*L--QVILLMVAKLGISVLNRPQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .64 RPM |
SRP017611_kidney | 0 .10 RPM | 77 .60 RPM |
SRP017611_liver | 0 .00 RPM | 28 .41 RPM |