RetrogeneDB ID: | retro_ocun_1348 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:12023417..12023727(-) | ||
Located in intron of: | ENSOCUG00000011678 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000016368 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.96 % |
Parental protein coverage: | 91.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | LHYFGFGYAALVATGGIIGYA-KAGSVPSLA-AGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTLAGIMG |
LH.FGFGY....A.GGI.GYA.KAG.VPSL..AG.L....AGLGAY.L.QD.R..W..LAT..TLAG..G | |
Retrocopy | LHEFGFGYSSGGAAGGITGYA<KAGGVPSLV<AGFLLRDFAGLGAYHLPQDLRSIWILLATCETLAGSSG |
Parental | MRFYHSG-KFMPAGLIA-GASLLMVAKVGISMLDRPHQ |
.RF..SG.K.MP.GLIA..A..LMV.K.GISML.RPHQ | |
Retrocopy | IRFHLSG<KHMPKGLIA>AARSLMVNKLGISMLNRPHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 107 .94 RPM |
SRP017611_liver | 0 .00 RPM | 18 .88 RPM |