RetrogeneDB ID: | retro_etel_1170 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_221301:878..1517(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP1 | ||
Ensembl ID: | ENSETEG00000014741 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
Percent Identity: | 78.87 % |
Parental protein coverage: | 57.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFK |
MDTGV..GGLNVTLTI.LLMHGKEVGSII.KK.ES.KKM.EESGARINISEGNC..R.ITL.GPT.AI.K | |
Retrocopy | MDTGVSDGGLNVTLTIGLLMHGKEVGSIIRKKEESGKKMWEESGARINISEGNCLDRMITLPGPTHAISK |
Parental | AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN |
AFA.I.DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSL.GKGGCKIK.IRESTGAQVQVA..MLPN | |
Retrocopy | AFAVIMDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLLGKGGCKIKDIRESTGAQVQVARHMLPN |
Parental | STERAITXXXXXXXIIECVKQICVVMLE----SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFP |
ST.RAIT.......IIECVK.ICVVMLE....SPPKG.TIPYRPKPSSSPVIFAGGQ...S.G......P | |
Retrocopy | STKRAITIAGILQSIIECVKRICVVMLETLSRSPPKGMTIPYRPKPSSSPVIFAGGQAYTSQGQYAIPQP |
Parental | HTT |
..T | |
Retrocopy | DLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |