RetrogeneDB ID: | retro_pvam_1168 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_35605:467..1060(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP1 | ||
Ensembl ID: | ENSPVAG00000012284 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
Percent Identity: | 69.65 % |
Parental protein coverage: | 53.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCPERIITLAGPTNAIF |
..TGV..GGLN.TLT.RLLMH.KE.G..I.KKG.SVKK...ESG..INI.S.GNCPE.IITLA..TNA.F | |
Retrocopy | LNTGVTGGGLNITLTTRLLMHAKEIGHVIKKKGDSVKKVSKESGVCINI>SGGNCPEKIITLARLTNATF |
Parental | KAFAMIIDKLEEDISSSMTNSTAASK-PPVTLRLVVPASQCGSLIGKGGCKIKEIRE-STGAQVQVAGDM |
KA.AM.I.KL.EDISSSMTN.TAAS..PPVTLRL.VPASQCG.LI.K.GCKIKEIRE...G...QVAG.. | |
Retrocopy | KASAMVISKLKEDISSSMTNRTAASR>PPVTLRLEVPASQCGFLIRKSGCKIKEIRE<VKGVLFQVAGAT |
Parental | LPNSTERAITIAGIPQSIIECVKQICVVMLE-TLSQSPPKGVTIPYRPKPSSSPVIFAGGQ |
LPNSTE.AITIAGI..SI.ECV.QIC.V..E.TLS..PPKGV.I.Y.PK...S.VIFA.GQ | |
Retrocopy | LPNSTEEAITIAGISRSIMECVRQICMVVCE>TLS*YPPKGVIILYQPKLHNSSVIFARGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |