RetrogeneDB ID: | retro_etel_1880 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_310905:4604..5068(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SET | ||
Ensembl ID: | ENSETEG00000016746 | ||
Aliases: | None | ||
Description: | SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] |
Percent Identity: | 56.05 % |
Parental protein coverage: | 69.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | EKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQ-KYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVS |
EKEQQ..I....E..........Q.SE.I.KVEQ..Y.K..Q.FFQKRSE.I..I.NF..TTFV.H.Q.. | |
Retrocopy | EKEQQKVIGY-NEIKYKMK*TS*QISERIVKVEQ<EYHKFSQSFFQKRSE*ITQILNFRPTTFVSHLQML |
Parental | ALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSG |
A...EEDEEALHY..R.EV.EF.D.KSGYRI............KVLSKEFH.NESG.P.SKSTEIK.K.G | |
Retrocopy | AFFEEEDEEALHYVSRIEVIEF*DVKSGYRIYIFVFMKIFTSKKVLSKEFHPNESGVPGSKSTEIKPKFG |
Parental | KDLTKRSSQTQNKASRK |
K...K.SS..QN.ASR. | |
Retrocopy | KASMKFSSPKQNSASRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Canis familiaris | ENSCAFG00000032728 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000016746 | 15 retrocopies | |
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Mus musculus | ENSMUSG00000054766 | 17 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007501 | 12 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010546 | 6 retrocopies |