RetrogeneDB ID: | retro_etel_939 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_187953:1271..1861(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SET | ||
Ensembl ID: | ENSETEG00000016746 | ||
Aliases: | None | ||
Description: | SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] |
Percent Identity: | 95.05 % |
Parental protein coverage: | 88.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | PKRQPSSLPQMKKPKVQGT-PA-PPKEEKEQQEAIEHIDEVQNE-IDRLNEQASEEILKVEQKYNKLRQP |
PKRQPSSL.QM...KVQGT.PA.PPKEEKEQQEAIEHIDEVQNE.IDRLN.QASEEILKVEQKYNKLRQP | |
Retrocopy | PKRQPSSLQQM*NSKVQGT<PA<PPKEEKEQQEAIEHIDEVQNE<IDRLNGQASEEILKVEQKYNKLRQP |
Parental | FFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFEN |
FFQKRSELIAKIPNF.VTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFEN | |
Retrocopy | FFQKRSELIAKIPNFGVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFEN |
Parental | KVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF-SDHS |
KVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF.SDHS | |
Retrocopy | KVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF<SDHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Canis familiaris | ENSCAFG00000032728 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000016746 | 15 retrocopies | |
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Mus musculus | ENSMUSG00000054766 | 17 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007501 | 12 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010546 | 6 retrocopies |