RetrogeneDB ID: | retro_fcat_1811 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:32215467..32216059(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GLUL | ||
Ensembl ID: | ENSFCAG00000010551 | ||
Aliases: | None | ||
Description: | glutamate-ammonia ligase [Source:HGNC Symbol;Acc:4341] |
Percent Identity: | 82.18 % |
Parental protein coverage: | 50.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DIVEAHYRACLYAGIKIAGTNAEVMPAQWE-FQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKP |
DIVEAHY.ACLY..IKI.GTNAEVMPAQW..F.IG.CEG.DMGDHLW.A.FILH.V.EDFGVIATFDPK. | |
Retrocopy | DIVEAHYQACLYTSIKIGGTNAEVMPAQWD<FKIGHCEGTDMGDHLWMASFILHHVREDFGVIATFDPKR |
Parental | IPGNWNGAGCHTNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDF |
IPGN.NGAGCHT.FSTKAMREENGLKYIEESIEKLSKRHQYHI.AYDPKGGLDNA.RLTGFH.TSNINDF | |
Retrocopy | IPGNCNGAGCHTDFSTKAMREENGLKYIEESIEKLSKRHQYHI*AYDPKGGLDNAQRLTGFHKTSNINDF |
Parental | SAGVANRGASIRIPRTVGQEKKGYFEDRR-PSANCDPFSVTEALIRTCLLNETGDEPFQYKN |
SA.VANRGASI.IP.TVGQEK.GYFED.R.P..N.D.F.VT.ALI..CLL.ETG.E.FQYKN | |
Retrocopy | SASVANRGASIHIPWTVGQEK-GYFEDHR<PLCN-DLFLVTGALISMCLLVETGNEHFQYKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 1430 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 47 .10 RPM |
SRP017611_liver | 0 .10 RPM | 353 .61 RPM |