RetrogeneDB ID: | retro_mmul_954 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:57781744..57782396(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.345 | ||
Ensembl ID: | ENSMMUG00000022884 | ||
Aliases: | None | ||
Description: | glutamine synthetase [Source:RefSeq peptide;Acc:NP_001252942] |
Percent Identity: | 77.27 % |
Parental protein coverage: | 58.45 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MTTSASSHLNKG-IKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQ |
MT.SASS..NK..IKQ.YMSLPQGEKVQAM.IWI..TGE.L.CKT.TLD.EPKCVEELPEWNFD.SST.Q | |
Retrocopy | MTPSASSC*NKA<IKQMYMSLPQGEKVQAMCIWIIVTGE*LHCKTHTLDGEPKCVEELPEWNFDSSSTFQ |
Parental | SEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVSNQHPWFGMEQEYTL |
SE.SNSDM.LVPAAMF.DPF.KDPNKLV.CEVFKYNR..AETNLR..CK.IMDMVSNQH.WFG.EQ.YTL | |
Retrocopy | SEISNSDMCLVPAAMF*DPFHKDPNKLVFCEVFKYNRKSAETNLRYICKWIMDMVSNQHLWFGIEQKYTL |
Parental | MGTDGHP-FGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGP |
MGTDG.P.FGWPSN.F.GP..PY.C.VGAD.AY.R...E..Y.A.LYAG.KIAGTN.EVMP.QWEFQIG. | |
Retrocopy | MGTDGQP<FGWPSNCFFGPHSPYHCAVGADKAYKRNVLESYYQAYLYAGIKIAGTNVEVMPVQWEFQIGS |
Parental | CEGISMGDHL |
.EGISMGDHL | |
Retrocopy | HEGISMGDHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 598 .24 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 850 .10 RPM |
SRP007412_cerebellum | 0 .00 RPM | 345 .93 RPM |
SRP007412_heart | 0 .00 RPM | 212 .40 RPM |
SRP007412_kidney | 0 .00 RPM | 71 .48 RPM |
SRP007412_liver | 0 .00 RPM | 177 .22 RPM |
SRP007412_testis | 0 .00 RPM | 1206 .94 RPM |