RetrogeneDB ID: | retro_fcat_841 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:60724867..60725330(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026745 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.52 % |
Parental protein coverage: | 81.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | YFQRMTTTSS-VEGKQNLVIMGRKTWFSIPEKNRPLKD-RINIVLSRDLKEPPQGAHF-LAKSLDDALEL |
YF.RMTT.SS..E.KQ.LVIMGRKTWFSIP.KN.PLK..RIN.VLS.DLKEPPQ.AHF.LAKSL..AL.. | |
Retrocopy | YFPRMTTSSS<IERKQTLVIMGRKTWFSIPKKNQPLKE>RINLVLS*DLKEPPQEAHF>LAKSLVNALKV |
Parental | TEQPELAHKVDMVWVVGGSSVYKEAMNRPGHVRLFVTRIMQEFESDTFFPEIDLEKYKLLPEYPGVLSDI |
.EQ.ELA.KV.MVW.VGGSSVYKE....PGH.RLFVTRIMQ.FESDT.FP..DLEKYKL.P.YPG.LSD. | |
Retrocopy | IEQLELANKVNMVWIVGGSSVYKETTKKPGHLRLFVTRIMQKFESDTLFPDFDLEKYKLPPVYPGILSDV |
Parental | QEEKSIKYKFEVYEKNN |
QEEK.I.YKFEVY.KN. | |
Retrocopy | QEEKGIEYKFEVYAKND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 3 .30 RPM |
SRP017611_liver | 0 .00 RPM | 6 .67 RPM |