RetrogeneDB ID: | retro_mmus_3326 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:31567881..31568177(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dhfr | ||
Ensembl ID: | ENSMUSG00000021707 | ||
Aliases: | Dhfr, 8430436I03Rik, AA607882, AI662710, AW555094 | ||
Description: | dihydrofolate reductase [Source:MGI Symbol;Acc:MGI:94890] |
Percent Identity: | 66. % |
Parental protein coverage: | 52.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RMTTTSSVEGKQNLVIMGRK-TWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIEQPE |
R.TT.SS.E.K..LVI.G.K..W.SI.EK...LK.RINIVL.REL.EPP.GA.FLAKSLD..LRL.E.PE | |
Retrocopy | RVTTISSMESKHDLVIWGGK<AWLSILEKTEALKERINIVLCRELEEPPQGARFLAKSLDNVLRLTEKPE |
Parental | LASKVDMVWIVGGSSVYQEAMNQPGHLRLF |
LA.K.D.VW.V.G.SVY...MNQPGHLRL. | |
Retrocopy | LADKLDVVWAVRGGSVYKGVMNQPGHLRLW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .02 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .21 RPM |
SRP007412_heart | 0 .00 RPM | 2 .37 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .09 RPM |
SRP007412_liver | 0 .00 RPM | 27 .85 RPM |
SRP007412_testis | 0 .00 RPM | 3 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015750 | 2 retrocopies | |
Bos taurus | ENSBTAG00000007681 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019556 | 4 retrocopies | |
Equus caballus | ENSECAG00000026827 | 1 retrocopy | |
Felis catus | ENSFCAG00000026745 | 3 retrocopies | |
Homo sapiens | ENSG00000228716 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000022366 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012200 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018283 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000024860 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008704 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021707 | 1 retrocopy |
retro_mmus_3326 ,
|
Nomascus leucogenys | ENSNLEG00000012989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005127 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000025320 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015600 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017042 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013521 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000014125 | 2 retrocopies |