Parental gene:

ENSCJAG00000019556

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:127554610..127589627(+)


>ENSCJAG00000019556
ATGGTTCAATTGCTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGTGAACTGCCCTGGCCGCC
GCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACGACCTCTTCAGTAGAAGATAAACAGAATTTGGTGATTATGG
GTAGGAAGACCTGGTTCTCCATTCCTGAGAAGAATCGACCTTTAAAGGATAGAATTAATGTAGTTCTCAGCAGGGAACTC
AAGGAACCTCCACAAGGAGCTCTTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAACCAGAATTAGCAAA
TAAAGTAGACATGATTTGGATAATTGGTGGCAGTTCTGTTTATAAGGAAGCCATGGATCACCCAGGCCATCTTAAACTGT
TTGTGACAAGGATCATGCAGGACTTTGAAAGTGACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCA
CAATACCCAGGTGTTCCCTCTGATGACCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAGAAGAATGATTA
A

Library Parental gene expression (RPM)
SRP051959_spleen 2 .73 RPM
SRP051959_skeletal_muscle 2 .12 RPM
SRP051959_lymph_node 2 .83 RPM
SRP051959_lung 2 .29 RPM
SRP051959_liver 34 .90 RPM
SRP051959_kidney 11 .20 RPM
SRP051959_heart 2 .82 RPM
SRP051959_colon 5 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015750 ortholog_one2many 2 retrogenes
retro_amel_218, retro_amel_842,
Bos taurus ENSBTAG00000007681 ortholog_one2many 1 retrogene
retro_btau_351,
Equus caballus ENSECAG00000026827 ortholog_one2many 1 retrogene
retro_ecab_513,
Felis catus ENSFCAG00000026745 ortholog_one2many 3 retrogenes
retro_fcat_579, retro_fcat_705, retro_fcat_841,
Homo sapiens ENSG00000228716 ortholog_many2many 4 retrogenes
retro_hsap_1927, retro_hsap_2119, retro_hsap_3602, retro_hsap_6,
Gorilla gorilla ENSGGOG00000022366 ortholog_one2many 2 retrogenes
retro_ggor_1959, retro_ggor_2429,
Myotis lucifugus ENSMLUG00000012200 ortholog_one2many 2 retrogenes
retro_mluc_1109, retro_mluc_2577,
Macaca mulatta ENSMMUG00000018283 ortholog_many2many 13 retrogenes
retro_mmul_1496, retro_mmul_425, retro_mmul_692, retro_mmul_693, retro_mmul_695, retro_mmul_700, retro_mmul_701, retro_mmul_704, retro_mmul_738, retro_mmul_760, retro_mmul_768, retro_mmul_82, retro_mmul_994,
Monodelphis domestica ENSMODG00000024860 ortholog_one2many 3 retrogenes
retro_mdom_1685, retro_mdom_604, retro_mdom_703,
Mustela putorius furo ENSMPUG00000008704 ortholog_one2many 1 retrogene
retro_mputfur_1107,
Mus musculus ENSMUSG00000021707 ortholog_one2many 1 retrogene
retro_mmus_3326,
Nomascus leucogenys ENSNLEG00000012989 ortholog_one2many 3 retrogenes
retro_nleu_1193, retro_nleu_2314, retro_nleu_2631,
Oryctolagus cuniculus ENSOCUG00000005127 ortholog_one2many 3 retrogenes
retro_ocun_1351, retro_ocun_1640, retro_ocun_650,
Otolemur garnettii ENSOGAG00000025320 ortholog_many2many 1 retrogene
retro_ogar_222,
Pongo abelii ENSPPYG00000015600 ortholog_many2many 2 retrogenes
retro_pabe_2959, retro_pabe_41,
Pan troglodytes ENSPTRG00000017042 ortholog_many2many 3 retrogenes
retro_ptro_109, retro_ptro_1551, retro_ptro_2988,
Rattus norvegicus ENSRNOG00000013521 ortholog_one2many 1 retrogene
retro_rnor_2030,
Sus scrofa ENSSSCG00000014125 ortholog_one2many 2 retrogenes
retro_sscr_104, retro_sscr_1131,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_531 99.46 100.00
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2. retro_cjac_2017 90.43 100.00
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3. retro_cjac_2298 100.00 100.00
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4. retro_cjac_2446 66.24 81.72
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Download FASTA sequences of all ENSCJAG00000019556 retrocopies