RetrogeneDB ID: | retro_ocun_1640 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018735:258927..259273(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005127 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.65 % |
Parental protein coverage: | 61.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RINIVLSRELKEPPQGAHFLAKSLADALKLIEEPELADKVDMVWIVGGSSVYKEAMNQPGHLRLFVTRIM |
RIN.VL.RE..EPPQGA.FLAKSL.DALKL..EPEL...VD..WI.GGSSVY...MN.PG.LRLFVTRI. | |
Retrocopy | RINVVLHREHQEPPQGAPFLAKSLHDALKLSKEPELRNEVDTPWIEGGSSVYMDSMNKPGRLRLFVTRIT |
Parental | QEFESDT-FFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN |
.EFESDT.FF..IDLEKYKLLPEYP.VL.D.QEE.G.KYK..VY.KN | |
Retrocopy | PEFESDT>FF-QIDLEKYKLLPEYPRVLPDFQEE*GVKYKLGVYKKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .20 RPM |
SRP017611_liver | 0 .00 RPM | 35 .53 RPM |