RetrogeneDB ID: | retro_fcat_579 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:147982391..147982917(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026745 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.74 % |
Parental protein coverage: | 94.15 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | VSQNMGIGKNGDLPWP-PLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRD |
VSQ.MG.GKN..LPWP.P.RNEFK.F.R.TTTS..EGKQN.VIMGRKT..S.P.K..PLKDRIN.VLSR. | |
Retrocopy | VSQKMGNGKNRNLPWP<PFRNEFKNFRRRTTTSA-EGKQNFVIMGRKT*LSLP*KS*PLKDRINPVLSRE |
Parental | LKEPPQGAHFLAKSLDDALELTEQPELAHK-VDMVWVVGGSSVYKEAMNRPGHVRLFVTRIMQEFESDTF |
LKEP.QGAHFLAKSLDD.L....Q.EL..K.VD.V..VGGSS.YKE.MN.PGH.RL.VTRIMQEFES.TF | |
Retrocopy | LKEPSQGAHFLAKSLDDDLKRIKQSELTKK<VDVV*TVGGSSAYKETMNKPGHPRLAVTRIMQEFESNTF |
Parental | FPEIDLEKYKLLPEYPGVLSDIQEEKSIKYKFEVYEKNN |
FP.IDLEK.KLLPEYPGVLS..QEEKS..YKFEVY..NN | |
Retrocopy | FP*IDLEKCKLLPEYPGVLSGVQEEKSVMYKFEVYKDNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 3 .30 RPM |
SRP017611_liver | 0 .00 RPM | 6 .67 RPM |