RetrogeneDB ID: | retro_sscr_1131 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | JH118716.1:13240..13683(-) | ||
Located in intron of: | ENSSSCG00000025992 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000014125 | ||
Aliases: | None | ||
Description: | Sus scrofa dihydrofolate reductase (DHFR), mRNA. [Source:RefSeq mRNA;Acc:NM_001244064] |
Percent Identity: | 89.93 % |
Parental protein coverage: | 79.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PLNCIVAVSQNMGIGKNGDLPWPPLRNEYK-YQRMTTTSSVEGKQNLVIMGRKTWF-SIPEKNRPLKDRI |
PLNCIVAV.QNMG.GKN.DLPWPPLRN.YK..QRMTTTSSVEGKQNLV.MGRKTWF.SIPEKN.PLKDRI | |
Retrocopy | PLNCIVAVPQNMGFGKNEDLPWPPLRNDYKCFQRMTTTSSVEGKQNLVTMGRKTWF<SIPEKN*PLKDRI |
Parental | NIVLSRELKEPPQGAHFLAKSLDDALKLTEQPELKNKVDMVWIVGGSSVYKEAMNKPGHIRLFVTRIMKE |
N.VLSRELKEPPQGAHFLAKSLDDALKLTE.PELKNKVDMVW.VGGSSVYKEAMNKPGH.RLFVTRIMKE | |
Retrocopy | NTVLSRELKEPPQGAHFLAKSLDDALKLTEKPELKNKVDMVWLVGGSSVYKEAMNKPGHLRLFVTRIMKE |
Parental | FESDTFFPE |
FESDTFF.. | |
Retrocopy | FESDTFFSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 1 .86 RPM |
SRP014902_testis | 0 .00 RPM | 7 .50 RPM |
SRP018288_heart | 0 .03 RPM | 7 .02 RPM |
SRP018288_kidney | 0 .00 RPM | 21 .08 RPM |
SRP018288_liver | 0 .00 RPM | 31 .82 RPM |
SRP018288_lung | 0 .00 RPM | 14 .66 RPM |
SRP018856_adipose | 0 .00 RPM | 4 .45 RPM |
SRP035408_brain | 0 .00 RPM | 6 .29 RPM |
SRP035408_liver | 0 .00 RPM | 20 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015750 | 2 retrocopies | |
Bos taurus | ENSBTAG00000007681 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019556 | 4 retrocopies | |
Equus caballus | ENSECAG00000026827 | 1 retrocopy | |
Felis catus | ENSFCAG00000026745 | 3 retrocopies | |
Homo sapiens | ENSG00000228716 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000022366 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012200 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018283 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000024860 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008704 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021707 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005127 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000025320 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015600 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017042 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013521 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000014125 | 2 retrocopies |
retro_sscr_104, retro_sscr_1131 ,
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